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</o:shapelayout></xml><![endif]--></head><body lang=FR link="#0563C1" vlink="#954F72"><div class=WordSection1><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>(sorry for multiple reception)<o:p></o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>We are pleased to announce the 1.2 release of the AgroPortal: </span><a href="http://agroportal.lirmm.fr/"><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1155CC'>http://agroportal.lirmm.fr/</span></a><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>AgroPortal is an ontology repository dedicated to the agronomy</span></b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>. The platform reuses the NCBO BioPortal infrastructure and customizes it. As of today, it includes 56 ontologies (4 private ones) about multiple aspect of agricultural data: technologies, breeding, food, plant phenotypes and traits, anatomy, etc. Those ontologies have been uploaded in collaboration with several driving use cases including: INRA’s vocabularies, the Crop Ontology project, the AgroLD project, the RDA Wheat Data Interoperability WG and more recently the FAO VEST Registry.</span><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Among the new content of this release we include:</span><span lang=EN-US><o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:36.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l0 level1 lfo1;vertical-align:baseline'><![if !supportLists]><span style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>18 new ontologies<o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:36.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l0 level1 lfo1;vertical-align:baseline'><![if !supportLists]><span style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>New categories for ontologies<o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:36.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l1 level1 lfo2;vertical-align:baseline'><![if !supportLists]><span lang=EN-US style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>We have enabled specific “slice of AgroPortal” for each group of ontologies: crop, lovinra, agrold, wheat e.g., <o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:72.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l1 level2 lfo3;vertical-align:baseline'><![if !supportLists]><span lang=EN-US style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'><a href="http://crop.agroportal.lirmm.fr/"><span lang=EN-US style='color:#1155CC'>http://wheat.agroportal.lirmm.fr/</span></a></span><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'> allows to see/use only the ontologies selected by the RDA Wheat Data Interoperability WG;<o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:72.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l1 level2 lfo3;vertical-align:baseline'><![if !supportLists]><span lang=EN-US style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'><a href="http://crop.agroportal.lirmm.fr/"><span lang=EN-US style='color:#1155CC'>http://crop.agroportal.lirmm.fr/</span></a></span><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'> allows to see/use only the ontologies developed within the Crop Ontology project.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Among the new feature of this release (and 2.1) we include:</span><span lang=EN-US><o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:36.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l3 level1 lfo4;vertical-align:baseline'><![if !supportLists]><span lang=EN-US style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>We have enabled the storing of:<o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:72.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l3 level2 lfo5;vertical-align:baseline'><![if !supportLists]><span lang=EN-US style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Interportal mappings</span></b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>: between an ontology within AgroPortal and an ontology in another portal appliance (typically the NCBO BioPortal itself). <o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:72.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l3 level2 lfo5;vertical-align:baseline'><![if !supportLists]><span lang=EN-US style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>External mappings</span></b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>: between an ontology within AgroPortal and any other ontology/vocabulary for which URIs are available.<o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:72.0pt;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>For instance: </span><a href="http://agroportal.lirmm.fr/ontologies/CO_715?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCO_715_0000165#mappings"><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1155CC'>http://agroportal.lirmm.fr/ontologies/CO_715?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCO_715_0000165#mappings</span></a><span lang=EN-US><o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:36.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l2 level1 lfo6;vertical-align:baseline'><![if !supportLists]><span lang=EN-US style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Multiple relation mappings</span></b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'> i.e., the possibility to tag a mapping with multiple semantic web properties such as skos:exactMatch, gold:translation, etc.<o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:36.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l2 level1 lfo6;vertical-align:baseline'><![if !supportLists]><span style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Annotations scoring</span></b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>. Annotations returned by the AgroPortal Annotator are now scored based (mainly) on frequencies. </span><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>See [<a href="http://www.lirmm.fr/~jonquet/publications/documents/Article-SWAT4LS_2014.pdf"><span style='color:#1155CC'>PDF</span></a>] for details.<o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:36.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l2 level1 lfo6;vertical-align:baseline'><![if !supportLists]><span style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Annotation <b>RDF outputs using the Annotation Ontology</b>. </span><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>See [<a href="http://www.lirmm.fr/~jonquet/publications/documents/Article-SWAT4LS_2014-poster.pdf"><span style='color:#1155CC'>PDF</span></a>] for details.<o:p></o:p></span></p><p style='mso-margin-top-alt:0cm;margin-right:0cm;margin-bottom:0cm;margin-left:36.0pt;margin-bottom:.0001pt;text-indent:-18.0pt;mso-list:l2 level1 lfo6;vertical-align:baseline'><![if !supportLists]><span lang=EN-US style='font-size:10.0pt;font-family:Symbol;color:black'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>A <b>new model for ontology metadata</b>. We have reviewed 350 properties from the most standard and relevant vocabularies out-there (21 totals) to describe metadata for ontologies (such as Dublin Core, OMV, DCAT, VOID, etc.) and selected 124 properties implemented in AgroPortal. Now, when an ontology is uploaded, metadata is directly extracted from the original file and used to populate the model. The current metadata appears on each ontology page e.g., </span><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'><a href="http://agroportal.lirmm.fr/ontologies/BIOREFINERY"><span lang=EN-US style='color:#1155CC'>http://agroportal.lirmm.fr/ontologies/BIOREFINERY</span></a></span><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>. We are currently working on adding metadata to current ontologies and new visualization inside the portal. This work is still in progress if interested contact me.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:12.0pt;font-family:"Times New Roman",serif'><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>In addition, we are pleased to announce the released of the <b>VEST/AgroPortal unique map of standards</b>, as the result of our collaboration with FAO within GODAN Action: </span><a href="http://vest.agrisemantics.org/"><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1155CC'>http://vest.agrisemantics.org/</span></a><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'> </span><span lang=EN-US><o:p></o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Every ontologies hosted in AgroPortal will automatically be included into the unique map.</span><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>AgroPortal is the result of a <b>collaboration between</b>: LIRMM, INRA, IRD, Bioversity International, CIRAD, FAO and the NCBO. The project acknowledge the <b>support of</b>: French ANR (grant ANR-12-JS02-01001), Univ. of Montpellier, CNRS, IBC of Montpellier (grant ANR-11-BINF-0002), the NUMEV Labex (grant ANR-10-LABX-20), the EU H2020 Marie Sk³odowska-Curie program (grant 701771).</span><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Please, refer to the project with: </span><span lang=EN-US><o:p></o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé-Yeumo, Vincent Emonet, John Graybeal, Mark A. Musen, Cyril Pommier & Pierre Larmande. </span><b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Reusing the NCBO BioPortal technology for agronomy to build AgroPortal</span></b><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>, In <i>7th International Conference on Biomedical Ontologies, ICBO'16, Demo Session</i>. Corvallis, Oregon, USA, August 2016. (D203), pp. 3.</span><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Please try out or contact us at </span><a href="mailto:agroportal-support@lirmm.fr"><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1155CC'>agroportal-support@lirmm.fr</span></a><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'> </span><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>AgroPortal release notes: </span><a href="https://github.com/agroportal/documentation/wiki/Release-notes"><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1155CC'>https://github.com/agroportal/documentation/wiki/Release-notes</span></a><span style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'> </span><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p style='margin:0cm;margin-bottom:.0001pt'><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'>Information: AgroPortal was presented last week at the GODAN Summit in New York City: </span><a href="http://summit.godan.info/"><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1155CC'>http://summit.godan.info/</span></a><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri",sans-serif;color:black'> </span><span lang=EN-US><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US>Regards<o:p></o:p></span></p><p class=MsoNormal>The AgroPortal team ;)<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><div style='mso-element:para-border-div;border:none;border-bottom:solid windowtext 1.0pt;padding:0cm 0cm 1.0pt 0cm'><p class=MsoNormal style='border:none;padding:0cm'><span lang=EN-US style='mso-fareast-language:FR'><o:p> </o:p></span></p></div><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'>Dr. <b>Clement JONQUET</b> - <i>PhD in Informatics - Assistant Professor<br>University of Montpellier<o:p></o:p></i></span></p><p class=MsoNormal><i><span lang=EN-US style='mso-fareast-language:FR'>Coordinator of the <a href="http://www.lirmm.fr/sifr/"><span style='color:blue'>SIFR</span></a> and <a href="http://agroportal.lirmm.fr/"><span style='color:blue'>AgroPortal</span></a> projects<o:p></o:p></span></i></p><p class=MsoNormal><i><span lang=EN-US style='mso-fareast-language:FR'>Visiting scholar, Stanford University (EU Marie Curie fellow)<o:p></o:p></span></i></p><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'><a href="mailto:jonquet@lirmm.fr"><span style='color:blue'>jonquet@lirmm.fr</span></a><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'><a href="http://www.lirmm.fr/~jonquet"><span style='color:blue'>http://www.lirmm.fr/~jonquet</span></a> <o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='mso-fareast-language:FR'>@Montpellier</span><span lang=EN-US style='mso-fareast-language:FR'> : +33/4 67 14 97 43<o:p></o:p></span></p><div style='mso-element:para-border-div;border:none;border-bottom:solid windowtext 1.0pt;padding:0cm 0cm 1.0pt 0cm'><p class=MsoNormal style='border:none;padding:0cm'><span lang=EN-US style='mso-fareast-language:FR'>@Stanford : +1 650 723 6725<b><o:p></o:p></b></span></p></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span lang=EN-US><o:p> </o:p></span></p></div></body></html>